CAPSID 5 MOST REPRESENTATIVE PUBLICATIONS (2017-2022 Inria Evaluation period)
- S. DEY, D. RITCHIE, E. D. LEVY, PDB-wide identification of biological assemblies from
conserved quaternary structure geometry, Nature Methods 15, 2018, p. 67–72, [doi:10.1038nmeth.4510], [hal:hal-01652359]. - M. E. RUIZ ECHARTEA, I. CHAUVOT DE BEAUCHENE, D. RITCHIE, EROS-DOCK:
Protein- Protein Docking Using Exhaustive Branch-and-Bound Rotational Search, Bioinformatics 35, 23, 2019, p. 5003–5010, [doi:10.1093bioinformatics/btz434], [hal:hal-02269812]. - B. SARKER, D. RITCHIE, S. ARIDHI, GrAPFI: predicting enzymatic function of proteins
from domain similarity graphs, BMC Bioinformatics, April 2020, This work is dedicated to the memory of David W. Ritchie, who recently passed away, [doi:10.1186s12859-020-3460-7], [hal: hal-03022601]. - S. Z. ALBORZI, A. AHMED NACER, H. NAJJAR, D. RITCHIE, M.-D. DEVIGNES, PPIDomainMiner: Inferring domain-domain interactions from multiple sources of protein-protein interactions, PLoS Computational Biology 17, 8, 2021, p. e1008844, [doi:10.1371journal.pcbi.1008844], [hal:hal-03435140].
- K. ISLAM, S. ARIDHI, M. SMAIL-TABBONE, Negative Sampling and Rule Mining for Explainable Link Prediction in Knowledge Graphs, Knowledge-Based Systems, Elsevier, 2022, 250, pp.109083. ⟨10.1016/j.knosys.2022.109083⟩, [hal:hal-03684205]. NB: Due to the Green Open Access conditions of Elsevier, this last publication is embargoed on HAL till 24/11/2022. However we can provide the author version on demand either directly from HAL or by mail to malika.smail or kamrul.islam .
_ __________________________________________________________________________________