Marie-Dominique Devignes (CNRS researcher ; Team Leader since September 2019) — complex network analysis; biological data mining; knowledge discovery in biological databases. marie-dominique.devignes AT loria.fr | +33 3 83 59 20 65
Malika Smail-Tabbone (MC, HDR, Université de Lorraine) — Data integration and analysis; knowledge discovery from biomedical data; graph and relational data mining. malika.smail AT loria.fr
Bernard Maigret (Emeritus CNRS researcher) — molecular dynamics simulation; virtual drug screening. bernard.maigret AT loria.fr
Sabeur Aridhi (MC, TELECOM Nancy) — big data; artificial intelligence; cloud computing; bioinformatics. sabeur.aridhi AT loria.fr
Isaure Chauvot de Beauchêne (CNRS researcher) — modeling proteins and their complexes, especially with nucleic acids. isaure.chauvot-de-beauchene AT loria.fr
Hamed Khakzad (Inria Junior Professor Chair, from 01/12/2022). hamed.khakzad AT inria.fr
Yasaman Karami (Inria researcher, from 01/01/2023). yasaman.karami AT inria.fr
PhD Students
Kamrul Islam (PhD student) — Distributed link prediction in large complex graphs: application to biomolecule interactions. Thesis defended on 16 December 2022.
kamrul.islam AT loria.fr
Diego Amaya Ramirez (PhD student) — 3D-modeling of HLA antigens – Structure-based study of donor-receptor compatibility. diego.amaya-ramirez AT inria.fr
Anna Kravchenko (RNAct PhD student) — Improving methods to dock RNA with proteins. anna.kravchenko AT loria.fr
Hrishikesh Dhondge (RNAct PhD student) — Data analysis on RNA recognition motifs (RRMs). hrishikesh.dhondge AT loria.fr
Athénaïs Vaginay (PhD student) — Model Construction and Analysis of Biological Networks: Application to Perturbed Networks in Diseases. athenais.vaginay AT loria.fr
Assistants
Isabelle Herlich (Inria Team Assistant)
isabelle.herlich AT inria.fr | +33 3 83 59 20 72
Antoinette Courrier (CNRS Team Assistant)
antoinette.courrier AT loria.fr | +33 3 83 59 20 09
Alumni
Antoine Moniot (PhD student) — Modeling protein / nucleic acid complexes by combinatorial structural fragment assembly. Thesis defended on December 12, 2022.
antoine.moniot AT loria.fr
Camille Besançon (Post-Doc Fellow) — Modelling long non coding RNA (ANRIL) interaction with regulatory proteins 2020-2021
Amina Ahmed Nacer (Post-Doc, Région Lorraine-CHRU de Nancy) – GraphScore project. 2019-2020
Bishnu Sarker (PhD student) — Developing distributed graph-based approaches for large-scale protein function annotation and knowledge discovery. Thesis defended on April 24, 2021.
Wissem Inoubli (PhD student, Tunis University) — Graph mining of distributed and dynamic graphs. Thesis defended on January 7, 2021.
Karina Mayumi Sakita (PhD student, State University of Maringá) – Virtual screening for identifying inhibitors.
Maria Elisa Ruiz-Echartea (PhD student) — Pairwise and Multi-Component Protein-Protein Docking Using Exhaustive Branch-and-Bound Tri-Dimensional Rotational Searches. Thesis defended on December 18, 2019.
Gabin Personeni (PhD student) — exploration of linked open data in view of knowledge discovery. Thesis defended on November 9, 2018.
Seyed Ziaeddin Alborzi (PhD student) — automatic protein domain function annotation. Thesis defended on February 23, 2018
Former Team Members
Louane Sigrist (Engineer Bioinformatics) – HLA-3D-Diff project
louane.sigrist AT loria.fr
Amal Stiti (M2 student, University of Tunis) – Distributed graph computing for protein function annotation
amal.stiti AT loria.fr
Philippe Noel (Bioinformatics Master-2 Inria Apprentice) — Design of Inhibitors of the Transfer of Antimicrobial Resistance – (LUE project « CITRAM »)
Claire Lacomblez (Engineer) — Design and Development of a Database System to Study the Effects of Epleronone on Heart Failure and Obesity (ANR project « FIGHT-HF »)
Dave Ritchie (Inria researcher; Capsid team founder) — protein docking; protein interactions; protein structure alignment. Dave Ritchie passed away on September, 15, 2019 (Obituary)
Antoine Chemardin (Development Engineer) — Galaxy structural bioinformatics platform
